Bioconductor GO enrichment

Showing : GO enrichment • reset

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4.5k

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clusterProfiler GO GO enrichment genesetenrichment

updated 10 months ago by jandrade • 0 • written 7.1 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.5k

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go enrichment gene ontology goseq go

5.3 years ago Raito92 ▴ 60

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1.2k

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gosemsim go enrichment go semantic similarity

6.1 years ago nooshin ▴ 300

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2.3k

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rnaseq topgo go enrichment

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by jgg • 0

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3.1k

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clusterprofiler go enrichment functional enrichment

updated 6.2 years ago by Guangchuang Yu ★ 1.2k • written 6.2 years ago by Jack ▴ 20

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1.4k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 6.5 years ago by Lluís Revilla Sancho ▴ 760 • written 6.5 years ago by eagomezc • 0

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1.1k

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goseq go enrichment

6.6 years ago mart1139 • 0

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1.7k

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chipseq go enrichment clusterprofiler

updated 6.8 years ago by Guangchuang Yu ★ 1.2k • written 6.8 years ago by Javier Pérez Florido ▴ 840

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4.0k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by josef.oeckl • 0

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2.4k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by triZZla • 0

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1.2k

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go enrichment topgo d.ananassae

updated 8.5 years ago by James W. MacDonald 67k • written 8.5 years ago by koeniger ▴ 10

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2.5k

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bacteria GO enrichment

updated 9.4 years ago by Marc Carlson ★ 7.2k • written 9.5 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Lol I'm not smart This solution didn't work because....the column name was wrong updated_m <- mcols(y) %>% as.data.frame() %…

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Success k = tximport(file = m,type = 'oarfish', txOut = TRUE, tx2gene = tx2gene) Failure y <…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k

hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.

Answer: Problems with oarfish + tximport + swish by Michael Love 43k

> This is fine Did tximeta() print that a matching transcriptome was found?

Votes

Answer: Limma Interaction Effect with Covariates

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

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